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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
02/09/2013 |
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Data da última atualização: |
04/04/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
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Afiliação: |
VALÉRIA S. LOPES-CAITAR; MAYRA C. C. G. DE CARVALHO, UENP; MARCIA KAMOGAE KUWAHARA, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI; WALDIR PEREIRA DIAS, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
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Título: |
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
BMC Genomics, v. 14, article 577, 2013. |
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Páginas: |
17 p. |
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ISSN: |
1471-2164 |
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DOI: |
10.1186/1471-2164-14-577 |
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Idioma: |
Inglês |
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Conteúdo: |
The Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. MenosThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. ... Mostrar Tudo |
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Thesagro: |
Soja. |
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Thesaurus Nal: |
Soybeans. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/102608/1/genome-wide.pdf
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Marc: |
LEADER 03155naa a2200265 a 4500
001 1965345
005 2022-04-04
008 2013 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/1471-2164-14-577$2DOI
100 1 $aLOPES-CAITAR, V. S.
245 $aGenome-wide analysis of the Hsp20 gene family in soybean$bcomprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses.$h[electronic resource]
260 $c2013
300 $a17 p.
520 $aThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function.
650 $aSoybeans
650 $aSoja
700 1 $aCARVALHO, M. C. C. G. de
700 1 $aLUANA M. DARBEN
700 1 $aKUWAHARA, M. K.
700 1 $aNEPOMUCENO, A. L.
700 1 $aDIAS, W. P.
700 1 $aABDELNOOR, R. V.
700 1 $aMARCELINO-GUIMARÃES, F. C.
773 $tBMC Genomics$gv. 14, article 577, 2013.
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Registro original: |
Embrapa Soja (CNPSO) |
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| Registros recuperados : 41 | |
| 3. |  | NOMURA, R. B. G.; LOPES-CAITAR, V. S.; HISHINUMA-SILVA, S. M.; MARCELINO-GUIMARÃES, F. C. Novos aspectos da interação Pratylenchus brachyurus-soja baseados na predição das proteínas-alvo no hospedeiro. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 16., 2021, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2021. p. 86-93. (Embrapa Soja. Documentos, 440). Regina Maria Villas Bôas de Campos Leite, Kelly Catharin, editoras técnicas. Acesso aberto.
Open access.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 6. | | PINTO, R. A. S.; HISHINUMA-SILVA, S. M.; NOMURA, R. B. G.; LOPES-CAITAR, V. S.; MARCELINO-GUIMARÃES, F. C. Caracterização da proteína FAR1 (Fatty-acid and retinol binding protein) do nematoide de cisto da soja Heterodera glycines. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 16., 2021, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2021. p. 100-107. (Embrapa Soja. Documentos, 440). Regina Maria Villas Bôas de Campos Leite, Kelly Catharin, editoras técnicas. Acesso aberto.
Open access.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 8. | | HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NOMURA, R. B. G.; NASCIMENTO, L. C.; DIAS, W. P.; HEWEZI, T.; MARCELINO-GUIMARÃES, F. C. Caracterização da proteína 14-3-3 nos nematoides que infectam a soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 15., 2020, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2020. 244 p. (Embrapa Soja. Documentos, 429). p. 143-151 (Embrapa Soja. Documentos, 429). Artigo de acesso aberto.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 9. | | PINTO, R. A. S.; NOMURA, R. B. G.; HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; DIAS, E. P.; LOPES, I. de O. N.; MARCELINO-GUIMARÃES, F. C. Efeito do silenciamento gênico de proteínas envolvidas no parasitismo de Pratylenchus brachyurus. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 17., 2022, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2022. (Embrapa Soja. Documentos, 446). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 121-128.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 10. | | PINTO, R. A. S.; NOMURA, R. B. G.; LOPES-CAITAR, V. S.; HISHINUMA-SILVA, S. M.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Perfil transcricional do gene GmHsp22.4 sob infecção pelo nematoide das lesões radiculares Pratylenchus brachyurus. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 15., 2020, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2020. 244 p. (Embrapa Soja. Documentos, 429). p. 83-89 (Embrapa Soja. Documentos, 429). Artigo de acesso aberto.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 11. | | MELLO, F. E. de; LOPES-CAITAR, V. S.; XAVIER, S. A.; MEHL, A.; MARCELINO-GUIMARÃES, F. C.; VERREET, J. A.; BALBI-PEÑA, M. I.; GODOY, C. V. Identification of QoI mutation in soybean pathogens in Brazil. Phytopathology, v. 108, n. 10S, p. S1.20, 2018. Supplement. Trabalho apresentado no International Congress of Plant Pathology - ICPP, 2018, Boston. Plant health in a global economy: abstracts.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 12. | | FAVORETO, L.; FALEIRO, V. de O.; FREITAS, M. A.; BRAUWERS, L. R.; GALBIERI, R.; HOMIAK, J. A.; LOPES-CAITAR, V. S.; MARCELINO-GUIMARÃES, F. C.; MEYER, M. C. First report of Aphelenchoides besseyi infecting the aerial part of cotton plants in Brazil. Plant Disease, v. 102, n. 12, p. 2662, Dec. 2018.| Tipo: Nota Técnica/Nota Científica |
| Biblioteca(s): Embrapa Soja. |
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| 13. | | FAVORETO, L.; FALEIRO, V. de O.; FREITAS, M. A.; BRAUWERS, L. R.; GALBIERI, R.; HOMIAK, J. A.; LOPES-CAITAR, V. S.; MARCELINO-GUIMARÃES, F. C.; MEYER, M. C. First report of Aphelenchoides besseyi infecting the aerial part of cotton plants in Brazil. Plant Disease, v. 102, n. 12, p. 2662, Dec. 2018.| Tipo: Nota Técnica/Nota Científica |
| Biblioteca(s): Embrapa Agrossilvipastoril. |
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| 14. | | LOPES-CAITAR, V. S.; NOMURA, R. B. G.; NASCIMENTO, L. C.; AGUDELO, P.; DIAS, W. P.; HEWEZI, T.; MARCELINO-GUIMARÃES, F. C. Mining the transcriptome of root-lesion nematode Pratylenchus brachyurus for effector candidates (Transcriptoma de Pratylenchus brachyurus para identificação de candidatos a effetores). In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2019, Recife. Anais... Brasília, DF: SBF, 2019. p. 167.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 15. | | NOMURA, R. B. G.; HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NASCIMENTO, L. C.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Prospecção de genes ortólogos de fitonematoides visando estratégias de amplo alcance. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 15., 2020, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2020. 244 p. (Embrapa Soja. Documentos, 429). P. 76-82 (Embrapa Soja. Documentos, 429). Artigo de acesso aberto.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 16. | | NOMURA, R. B. G.; LOPES-CAITAR, V. S.; HISHINUMA-SILVA, S. M.; LOPES, I. de O. N.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Silencing of an effector candidate of Pratylenchus brachyurus reduces its pathogenicity in soybean plants (Silenciamento de um candidato a efetor de Pratylenchus brachyurus reduz sua patogenicidade em plantas de soja) In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2019, Recife. Anais... Brasília, DF: SBF, 2019. p. 158.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 17. | | POLIZEL-PODANOSQUI, A. M.; CARVALHO, M. C. C. G. de; ROCHA, C. S.; DARBEN, L. M.; LOPES-CAITAR, V. S.; AOYAOGI, L. N.; MARCELINO-GUIMARÃES, F. C. Temporal gene expression analysis of effector candidates of Phakopsora pachyrhizi across the infection cycle. In: INTERNATIONAL CONGRESS ON MOLECULAR PLANT-MICROBE INTERACTIONS, 16., 2014, Rhodes. [Abstracts...]. Atenas: International Society of Molecular Plant-Microbe Interactions, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 18. | | SILVA, A. G.; HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NOMURA, R. G.; DIAS, W. P.; LOPES, I. de O. N.; CARVALHO, M. C. C. G.; MARCELINO-GUIMARÃES, F. C. Análise funcional do gene At4g10250 em resposta à infecção por Meloidogyne javanica em Arabidopsis thaliana. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 13., 2018, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2018. p. 46-52.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 19. | | DARBEN, L. M.; YOKOYAMA, A.; CASTANHO, F. M.; LOPES-CAITAR, V. S.; CARVALHO, M. C. da C. G. de; GODOY, C. V.; CARVALHO, S. de; GONELA, A.; MARCELINO-GUIMARÃES, F. C. Characterization of genetic diversity and pathogenicity of Phakopsora pachyrhizi mono-uredinial isolates collected in Brazil. European Journal of Plant Pathology, v. 156, p. 355-372, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Soja. |
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| 20. | | YOKOYAMA, A.; DARBEN, L. M.; LOPES-CAITAR, V. S.; AOYAGI, L. N.; CARVALHO, M. C. C. G. de; SOARES, R. M.; ALMEIDA, A. M. R.; MARCELINO-GUIMARÃES, F. C. Diversidade genética de isolados monouredinias de Phakopsora pachyrhizi coletados em diferentes regiões do Brasil. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 8., 2013, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2013. p. 11-15. (Embrapa Soja. Documentos, 339).| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 41 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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